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Online tools for biologists

A collection of web-based analytical and research tools that every biologist should know about and use!
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Science Exchange is a marketplace for scientific collaboration, where researchers can order experiments from the world's best labs. Take a tour below to see how to use Science Exchange for your research.

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KSF Labs joins Science Exchange – circuits + systems

scienceexchange.com

Pathway Commons is a collection of publicly available pathway information from multiple organisms.

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pathwaycommons.org

What is Cytoscape? Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization.

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What is Cytoscape?

cytoscape.org

MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes—only a handful of command-line options are needed to perform common alignment tasks.

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drive5.com

Exome Variant Server (EVS) - The goal of the NHLBI GO Exome Sequencing Project (ESP) is to discover novel genes and mechanisms contributing to heart, lung and blood disorders by pioneering the application of next-generation sequencing of the protein coding regions of the human genome across diverse, richly-phenotyped populations and to share these datasets and findings with the scientific community to extend and enrich the diagnosis, management and treatment of heart, lung and blood…

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evs.gs.washington.edu

ExAC Browser - The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a wide variety of large-scale sequencing projects, and to make summary data available for the wider scientific community.

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exac.broadinstitute.org

GPCRDB - great site for generating diagrams, and also annotating or searching for mutants via B-W#

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gpcrdb.org

Document to Structure - Extract chemical info from patents via Marvin suite

Document to Structure – extract chemical information from documents « ChemAxon – cheminformatics platforms and desktop applications

chemaxon.com

OSRA: Optical Structure Recognition - convert images of chemical structures into SMILES

OSRA: Optical Structure Recognition

cactus.nci.nih.gov

The Beautiful Science of Data Visualization

The Beautiful Science of Data Visualization

brighttalk.com